R-packages
RWNN:
- Status:
- Version 0.4: is found on CRAN.
- Experimental: Added changes to boosting, faster estimation when stacking, and fixed bugs in network reduction.
- Description:
- Creation, estimation, and prediction of random weight neural networks (RWNN), including popular variants like extreme learning machines (ELM), sparse RWNN, and deep RWNN. It further allows for the creation of ensemble RWNNs like bagging RWNN, boosting RWNN, stacking RWNN, and ensemble deep RWNN (edRWNN).
- Links:
- CRAN: Version 0.4
Github (Experimental): Version 0.4.2
ITNB:
- Status:
- Experimental: Missing vignette, unittesting, and transfer of bootstrapping to C++.
- Description:
- An inflated and truncated negative binomial regression model, with parameter estimation by the EM-algorithm, and confidence envelopes by either the parametric or non-parametric bootstrap.
- Links:
- Github (Stable): Version 0.2
Github (Experimental): Version 0.3
MPSMixtures:
- Status:
- Experimental: Needs additional help functions to make it easier to use. Furthermore, documentation needs to be updated.
- Description:
- The package implements an EA (Evolutionary Algorithm) for DNA mixture deconvolution and WOE estimation in MPS (Massively Parallel Sequencing) data.
- Links:
- Github (Experimental): Version 0.3.1
STRMPS:
- Status:
- Stable: Version has been removed from CRAN due to clashes with older versions of R; the new stable version will only work with newer versions of Biostrings and pwalign (i.e., after pwalign was extracted from the Biostrings package).
- Description:
- A package of function for handling raw STR (Short Tandem Repeat) MPS (Massively Parallel Sequencing) data.
- Links:
- Github (Stable): Version 0.6.9
